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GrainGenes Marker Report: POPA2_1358

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Locus
POPA2_1358
Type
SNP
Synonym
Other name11_21358
BOPA1_11_21358
BOPA1_8722-512
Synonym11_21358
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H68.3
Hordeum-OPA-2009-3H81.66
Hordeum-OPA123-2008-3H81.66
Hordeum-OPAConsensus-2011-3H93.81
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_735
i_11_21358
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1358
Marker name in barley OPA1 = 11_21358
Original SNP name = 8722-512
Most representative HarvEST:Barley Assembly #32 Unigene = 8722
Most representative HarvEST:Barley Assembly #35 Unigene = 735
HarvEST Unigene 35 Probe Set = Contig11997_at
Unigene 35 Rice Locus = LOC_Os01g56780
Description for best rice BLAST hit to Unigene 35 member = plus-3 domain containing protein, expressed; E value = 3E-68
Marker name in barley Pilot OPA2 = 2_1358
Description for best rice BLAST hit to Unigene 35 member = protein plus-3 domain containing protein, expressed; E value = 3E-68
BLAST hit in the rice genome = plus-3 domain containing protein, expressed


Probe for Locus
HAR35_735
Locus
POPA2_1358
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare