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GrainGenes Marker Report: POPA2_1361

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Locus	POPA2_1361
Type	SNP
Synonym	Other name 11_21361 BOPA1_11_21361 BOPA1_8743-197 Synonym 11_21361
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 50.4 Hordeum-OPA-2009-1H 55.49 Hordeum-OPA123-2008-1H 55.49 Hordeum-OPAConsensus-2011-1H 48.99
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18165 i_11_21361
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1361 Marker name in barley OPA1 = 11_21361 Original SNP name = 8743-197 Most representative HarvEST:Barley Assembly #32 Unigene = 8743 Most representative HarvEST:Barley Assembly #35 Unigene = 18165 HarvEST Unigene 35 Probe Set = Contig11410_at Unigene 35 Rice Locus = LOC_Os01g32130 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 6E-79 Marker name in barley Pilot OPA2 = 2_1361 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 6E-79 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_18165
Locus	POPA2_1361
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare