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GrainGenes Marker Report: POPA2_1362

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Locus	POPA2_1362
Type	SNP
Synonym	Other name 11_21362 BOPA1_11_21362 BOPA1_8752-523 Synonym 11_21362
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 155 Hordeum-OPA-2009-3H 173.17 Hordeum-OPA123-2008-3H 173.17 Hordeum-OPAConsensus-2011-3H 180.12
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18492 i_11_21362
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1362 Marker name in barley OPA1 = 11_21362 Original SNP name = 8752-523 Most representative HarvEST:Barley Assembly #32 Unigene = 8752 Most representative HarvEST:Barley Assembly #35 Unigene = 18492 HarvEST Unigene 35 Probe Set = Contig11655_at; HS09G19u_s_at Unigene 35 Rice Locus = LOC_Os01g74250 Description for best rice BLAST hit to Unigene 35 member = plant-specific domain TIGR01615 family protein, expressed; E value = 1E-132 Marker name in barley Pilot OPA2 = 2_1362 HarvEST Unigene 35 Probe Set = Contig11655_at, HS09G19u_s_at Description for best rice BLAST hit to Unigene 35 member = protein plant-specific domain TIGR01615 family protein, expressed; E value = 1E-132 BLAST hit in the rice genome = plant-specific domain TIGR01615 family protein, expressed
Probe for Locus	HAR35_18492
Locus	POPA2_1362
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare