Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1370

[Submit comment/correction]

Locus
POPA2_1370
Type
SNP
Synonym
Other name11_21370
BOPA1_11_21370
BOPA1_8817-798
Synonym11_21370
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H125.46
Hordeum-OPA123-2008-2H125.46
Hordeum-OPAConsensus-2011-2H143.18
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_18767
i_11_21370
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1370
Marker name in barley OPA1 = 11_21370
Original SNP name = 8817-798
Most representative HarvEST:Barley Assembly #32 Unigene = 8817
Most representative HarvEST:Barley Assembly #35 Unigene = 18767
HarvEST Unigene 35 Probe Set = Contig11251_at
Unigene 35 Rice Locus = LOC_Os04g56710
Description for best rice BLAST hit to Unigene 35 member = GTP cyclohydrolase I 1, putative, expressed; E value = 1E-169
Marker name in barley Pilot OPA2 = 2_1370
Description for best rice BLAST hit to Unigene 35 member = protein GTP cyclohydrolase I 1, putative, expressed; E value = 1E-169
BLAST hit in the rice genome = GTP cyclohydrolase I 1, putative, expressed


Probe for Locus
HAR35_18767
Locus
POPA2_1370
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare