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GrainGenes Marker Report: POPA2_1384

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Locus
POPA2_1384
Type
SNP
Synonym
Other name11_21384
BOPA1_11_21384
BOPA1_9022-543
Synonym11_21384
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H135.56
Hordeum-OPA123-2008-1H135.56
Hordeum-OPAConsensus-2011-1H138.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4257
i_11_21384
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1384
Marker name in barley OPA1 = 11_21384
Original SNP name = 9022-543
Most representative HarvEST:Barley Assembly #32 Unigene = 9022
Most representative HarvEST:Barley Assembly #35 Unigene = 4257
HarvEST Unigene 35 Probe Set = Contig11667_at
Unigene 35 Rice Locus = LOC_Os05g50800
Description for best rice BLAST hit to Unigene 35 member = protein ABIL1, putative, expressed; E value = 1E-115
Marker name in barley Pilot OPA2 = 2_1384
Description for best rice BLAST hit to Unigene 35 member = protein protein ABIL1, putative, expressed; E value = 1E-115
BLAST hit in the rice genome = protein ABIL1, putative, expressed


Probe for Locus
HAR35_4257
Locus
POPA2_1384
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare