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GrainGenes Marker Report: POPA2_1387

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Locus	POPA2_1387
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 164.42 Hordeum-OPA-2009-3H 173.17 Hordeum-OPA123-2008-3H 173.17 Hordeum-OPAConsensus-2011-3H 179.81 Hordeum-OWB-OPA2008-3H 206.905
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_18361
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1387 Most representative HarvEST:Barley Assembly #32 Unigene = 9042 Most representative HarvEST:Barley Assembly #35 Unigene = 18361 HarvEST Unigene 35 Probe Set = Contig11693_at Unigene 35 Rice Locus = LOC_Os01g66850 Description for best rice BLAST hit to Unigene 35 member = carboxylic ester hydrolase, putative, expressed; E value = 1E-146 Marker name in barley Pilot OPA2 = 2_1387 Original SNP name = 9042-204 Description for best rice BLAST hit to Unigene 35 member = protein carboxylic ester hydrolase, putative, expressed; E value = 1E-146 BLAST hit in the rice genome = carboxylic ester hydrolase, putative, expressed
Probe for Locus	HAR35_18361
Locus	POPA2_1387
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare