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GrainGenes Marker Report: POPA2_1390

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Locus	POPA2_1390
Type	SNP
Synonym	Other name 11_21390 BOPA1_11_21390 BOPA1_9084-713 Synonym 11_21390
Chromosome	5H
Map	Hordeum-OPAConsensus-2011-5H 106.36
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_19435 i_11_21390
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1390 Marker name in barley OPA1 = 11_21390 Original SNP name = 9084-713 Most representative HarvEST:Barley Assembly #32 Unigene = 9084 Most representative HarvEST:Barley Assembly #35 Unigene = 19435 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os09g36200 Description for best rice BLAST hit to Unigene 35 member = senescence-inducible chloroplast stay-green protein 1, putative, expressed; E value = 1E-113 BLAST hit in the rice genome = senescence-inducible chloroplast stay-green protein 1, putative, expressed
Probe for Locus	HAR35_19435
Locus	POPA2_1390