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GrainGenes Marker Report: POPA2_1402

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Locus	POPA2_1402
Type	SNP
Synonym	Other name 11_21402 BOPA1_11_21402 BOPA1_921-414 Synonym 11_21402
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPAConsensus-2011-3H 56.54 Hordeum-OWB-OPA2008-3H 31.839
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14134 i_11_21402
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1402 Marker name in barley OPA1 = 11_21402 Original SNP name = 921-414 Most representative HarvEST:Barley Assembly #32 Unigene = 921 Most representative HarvEST:Barley Assembly #35 Unigene = 14134 HarvEST Unigene 35 Probe Set = Contig1383_s_at Unigene 35 Rice Locus = LOC_Os05g11320 Description for best rice BLAST hit to Unigene 35 member = metallothionein-like protein type 3, putative, expressed; E value = 8E-22 BLAST hit in the rice genome = metallothionein-like protein type 3, putative, expressed
Probe for Locus	HAR35_14134
Locus	POPA2_1402 POPA1_1006