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GrainGenes Marker Report: POPA2_1403

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Locus	POPA2_1403
Type	SNP
Chromosome	5H
Chromosome Arm	5HS
Map	Barley-Core-2014_5H 42.07 Hordeum-OPA-2009-5H 46.23 Hordeum-OPA123-2008-5H 46.23 Hordeum-OPAConsensus-2011-5H 38.78
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_4677
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1403 Most representative HarvEST:Barley Assembly #32 Unigene = 9225 Most representative HarvEST:Barley Assembly #35 Unigene = 4677 HarvEST Unigene 35 Probe Set = Contig11887_at Unigene 35 Rice Locus = LOC_Os11g30560 Description for best rice BLAST hit to Unigene 35 member = cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase., putative, expressed; E value = 1E-178 Marker name in barley Pilot OPA2 = 2_1403 Original SNP name = 9225-188 Original SNP name = U35_5850_367 Description for best rice BLAST hit to Unigene 35 member = protein cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase., putative, expressed; E value = 1E-178 BLAST hit in the rice genome = cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase., putative, expressed
Probe for Locus	HAR35_4677
Locus	POPA2_1403
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare