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GrainGenes Marker Report: POPA2_1404

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Locus	POPA2_1404
Type	SNP
Synonym	Other name 11_21404 BOPA1_11_21404 BOPA1_9251-852 Synonym 11_21404
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 82.56 Hordeum-OPA123-2008-6H 82.56 Hordeum-OPAConsensus-2011-6H 94.18 Hordeum-OWB-OPA2008-6H 104.032
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_5799 i_11_21404
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1404 Marker name in barley OPA1 = 11_21404 Original SNP name = 9251-852 Most representative HarvEST:Barley Assembly #32 Unigene = 9251 Most representative HarvEST:Barley Assembly #35 Unigene = 5799 HarvEST Unigene 35 Probe Set = Contig11870_at Unigene 35 Rice Locus = LOC_Os06g11410 Description for best rice BLAST hit to Unigene 35 member = cyclin delta-2, putative, expressed; E value = 1E-101 Marker name in barley Pilot OPA2 = 2_1404 Description for best rice BLAST hit to Unigene 35 member = protein cyclin delta-2, putative, expressed; E value = 1E-101 BLAST hit in the rice genome = cyclin delta-2, putative, expressed
Probe for Locus	HAR35_5799
Locus	POPA2_1404
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare