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GrainGenes Marker Report: POPA2_1405

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Locus	POPA2_1405
Type	SNP
Synonym	Other name 11_21405 BOPA1_11_21405 BOPA1_9282-205 Synonym 11_21405
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 123.68 Hordeum-OPA123-2008-3H 123.68 Hordeum-OPAConsensus-2011-3H 132.62 Hordeum-OWB-OPA2008-3H 143.793
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_5772 i_11_21405
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1405 Marker name in barley OPA1 = 11_21405 Original SNP name = 9282-205 Most representative HarvEST:Barley Assembly #32 Unigene = 9282 Most representative HarvEST:Barley Assembly #35 Unigene = 5772 HarvEST Unigene 35 Probe Set = Contig11867_at; Contig11867_s_at Unigene 35 Rice Locus = LOC_Os01g66970 Description for best rice BLAST hit to Unigene 35 member = zinc finger protein, putative, expressed; E value = 2E-85 Marker name in barley Pilot OPA2 = 2_1405 HarvEST Unigene 35 Probe Set = Contig11867_at, Contig11867_s_at Description for best rice BLAST hit to Unigene 35 member = protein zinc finger protein, putative, expressed; E value = 2E-85 BLAST hit in the rice genome = zinc finger protein, putative, expressed
Probe for Locus	HAR35_5772
Locus	POPA2_1405
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare