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GrainGenes Marker Report: POPA2_1407

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Locus
POPA2_1407
Type
SNP
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_5636
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ]
Marker name in barley Pilot OPA1 = 2_1407
Most representative HarvEST:Barley Assembly #32 Unigene = 9322
Most representative HarvEST:Barley Assembly #35 Unigene = 5636
HarvEST Unigene 35 Probe Set = Contig12463_at; HVSMEa0003J04r2_at; HVSMEa0003J04r2_s_at
Unigene 35 Rice Locus = LOC_Os09g35900
Description for best rice BLAST hit to Unigene 35 member = 30S ribosomal protein S31, chloroplast precursor, putative, expressed; E value = 7E-36
BLAST hit in the rice genome = 30S ribosomal protein S31, chloroplast precursor, putative, expressed



Probe for Locus
HAR35_5636
Locus
POPA2_1407