Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1410

[Submit comment/correction]

Locus	POPA2_1410
Type	SNP
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Core-2014_3H 20.32 Hordeum-OPA-2009-3H 16.33 Hordeum-OPA123-2008-3H 16.33 Hordeum-OPAConsensus-2011-3H 18.21 Hordeum-OWB-OPA2008-3H 19.76
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008 Barley, USDA Core, 2014 Consensus
Probe	HAR35_1476
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1410 Most representative HarvEST:Barley Assembly #32 Unigene = 936 Most representative HarvEST:Barley Assembly #35 Unigene = 1476 HarvEST Unigene 35 Probe Set = Contig1404_at; Contig1404_x_at Unigene 35 Rice Locus = LOC_Os07g39740 Marker name in barley Pilot OPA2 = 2_1410 Original SNP name = 936-1219 HarvEST Unigene 35 Probe Set = Contig1404_at, Contig1404_x_at Description for best rice BLAST hit to Unigene 35 member = protein esterase precursor, putative, expressed; E value = 1E-154 BLAST hit in the rice genome = esterase precursor, putative, expressed
Probe for Locus	HAR35_1476
Locus	POPA1_1013 POPA2_1410
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare