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GrainGenes Marker Report: POPA2_1411

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Locus	POPA2_1411
Type	SNP
Synonym	Other name 12_21411 BOPA2_12_21411 Synonym 12_21411
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 54.4 Hordeum-OPA123-2008-3H 54.4 Hordeum-OPAConsensus-2011-3H 67.27 Hordeum-OWB-OPA2008-3H 62.951
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_18779 i_12_21411
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1411 Marker name in barley OPA1 = 12_21411 Original SNP name = 9387-347 Most representative HarvEST:Barley Assembly #32 Unigene = 9387 Most representative HarvEST:Barley Assembly #35 Unigene = 18779 HarvEST Unigene 35 Probe Set = Contig12141_s_at; Contig12142_at Unigene 35 Rice Locus = LOC_Os01g16970 Description for best rice BLAST hit to Unigene 35 member = protein kinase C substrate 80K-H, putative, expressed; E value = 3E-89 Marker name in barley Pilot OPA2 = 2_1411 Marker name in barley OPA2 = 12_21411 HarvEST Unigene 35 Probe Set = Contig12141_s_at, Contig12142_at Description for best rice BLAST hit to Unigene 35 member = protein protein kinase C substrate 80K-H, putative, expressed; E value = 3E-89 BLAST hit in the rice genome = protein kinase C substrate 80K-H, putative, expressed
Probe for Locus	HAR35_18779
Locus	POPA2_1411
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare