Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1426

[Submit comment/correction]

Locus
POPA2_1426
Type
SNP
Synonym
Other name11_21426
BOPA1_11_21426
BOPA1_9608-371
Synonym11_21426
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H18.2
Hordeum-OPA-2009-5H27
Hordeum-OPA123-2008-5H27
Hordeum-OPAConsensus-2011-5H21.68
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4027
i_11_21426
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1426
Marker name in barley OPA1 = 11_21426
Original SNP name = 9608-371
Most representative HarvEST:Barley Assembly #32 Unigene = 9608
Most representative HarvEST:Barley Assembly #35 Unigene = 4027
HarvEST Unigene 35 Probe Set = Contig12233_at
Unigene 35 Rice Locus = LOC_Os12g42970
Description for best rice BLAST hit to Unigene 35 member = GATA zinc finger family protein, expressed; E value = 2E-96
Marker name in barley Pilot OPA2 = 2_1426
Description for best rice BLAST hit to Unigene 35 member = protein GATA zinc finger family protein, expressed; E value = 2E-96
BLAST hit in the rice genome = GATA zinc finger family protein, expressed


Probe for Locus
HAR35_4027
Locus
POPA2_1426
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare