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GrainGenes Marker Report: POPA2_1427

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Locus	POPA2_1427
Type	SNP
Synonym	Synonym 11_21427
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 141.54 Hordeum-OPA123-2008-3H 141.54 Hordeum-OPAConsensus-2011-3H 150.11
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_19171
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1427 Marker name in barley OPA1 = 11_21427 Original SNP name = 9610-1195 Most representative HarvEST:Barley Assembly #32 Unigene = 9610 Most representative HarvEST:Barley Assembly #35 Unigene = 19171 HarvEST Unigene 35 Probe Set = Contig12222_at Unigene 35 Rice Locus = LOC_Os11g11990 Description for best rice BLAST hit to Unigene 35 member = NB-ARC domain containing protein, expressed; E value = 1E-156 Marker name in barley Pilot OPA2 = 2_1427 Original SNP name = U32_13507_130 Description for best rice BLAST hit to Unigene 35 member = protein NB-ARC domain containing protein, expressed; E value = 1E-156 BLAST hit in the rice genome = NB-ARC domain containing protein, expressed
Probe for Locus	HAR35_19171
Locus	POPA2_1427
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare