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GrainGenes Marker Report: POPA2_1432

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Locus	POPA2_1432
Type	SNP
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 47.47 Hordeum-OPA123-2008-1H 47.47
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_4243
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1432 Most representative HarvEST:Barley Assembly #32 Unigene = 9640 Most representative HarvEST:Barley Assembly #35 Unigene = 4243 HarvEST Unigene 35 Probe Set = Contig12367_at Unigene 35 Rice Locus = LOC_Os06g49350 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, unclassified, expressed; E value = 6E-66 Marker name in barley Pilot OPA2 = 2_1432 Original SNP name = 9640-158 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, unclassified, expressed; E value = 6E-66 BLAST hit in the rice genome = retrotransposon protein, putative, unclassified, expressed
Probe for Locus	HAR35_4243
Locus	POPA2_1432
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare