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GrainGenes Marker Report: POPA2_1436

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Locus
POPA2_1436
Type
SNP
Synonym
Other name11_21436
BOPA1_11_21436
BOPA1_9668-422
Synonym11_21436
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H140.5
Hordeum-OPA-2009-2H150.67
Hordeum-OPA123-2008-2H150.67
Hordeum-OPAConsensus-2011-2H164.35
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5434
i_11_21436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1436
Marker name in barley OPA1 = 11_21436
Original SNP name = 9668-422
Most representative HarvEST:Barley Assembly #32 Unigene = 9668
Most representative HarvEST:Barley Assembly #35 Unigene = 5434
HarvEST Unigene 35 Probe Set = Contig11924_at
Unigene 35 Rice Locus = LOC_Os04g57680
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 4E-58
Marker name in barley Pilot OPA2 = 2_1436
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 4E-58
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_5434
Locus
POPA2_1436
Synonym
SynonymBCD292
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare