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GrainGenes Marker Report: POPA2_1439

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Locus	POPA2_1439
Type	SNP
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Core-2014_5H 88.8 Hordeum-OPA-2009-5H 110.26 Hordeum-OPA123-2008-5H 110.26 Hordeum-OPAConsensus-2011-5H 103.01
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_16682
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1439 Most representative HarvEST:Barley Assembly #32 Unigene = 9698 Most representative HarvEST:Barley Assembly #35 Unigene = 16682 HarvEST Unigene 35 Probe Set = Contig12202_at Unigene 35 Rice Locus = LOC_Os09g35670 Description for best rice BLAST hit to Unigene 35 member = testis intracellular mediator protein, putative, expressed; E value = 1E-122 Marker name in barley Pilot OPA2 = 2_1439 Original SNP name = 9698-952 Description for best rice BLAST hit to Unigene 35 member = protein testis intracellular mediator protein, putative, expressed; E value = 1E-122 BLAST hit in the rice genome = testis intracellular mediator protein, putative, expressed
Probe for Locus	HAR35_16682
Locus	POPA2_1439
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare