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GrainGenes Marker Report: POPA2_1445

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Locus
POPA2_1445
Type
SNP
Synonym
Other name11_21445
BOPA1_11_21445
BOPA1_9745-628
Synonym11_21445
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H87.35
Hordeum-OPA123-2008-5H87.35
Hordeum-OPAConsensus-2011-5H74.83
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5075
i_11_21445
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1445
Marker name in barley OPA1 = 11_21445
Original SNP name = 9745-628
Most representative HarvEST:Barley Assembly #32 Unigene = 9745
Most representative HarvEST:Barley Assembly #35 Unigene = 5075
HarvEST Unigene 35 Probe Set = Contig12271_at; Contig12272_s_at
Unigene 35 Rice Locus = LOC_Os09g28810
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-107
Marker name in barley Pilot OPA2 = 2_1445
HarvEST Unigene 35 Probe Set = Contig12271_at, Contig12272_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-107
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_5075
Locus
POPA2_1445
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare