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GrainGenes Marker Report: POPA2_1448

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Locus	POPA2_1448
Type	SNP
Synonym	Other name 11_21448 BOPA1_11_21448 BOPA1_977-1377 Synonym 11_21448
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 86 Hordeum-OPA-2009-7H 98.5 Hordeum-OPA123-2008-7H 98.5 Hordeum-OPAConsensus-2011-7H 98.95
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14358 i_11_21448
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1448 Marker name in barley OPA1 = 11_21448 Original SNP name = 977-1377 Most representative HarvEST:Barley Assembly #32 Unigene = 977 Most representative HarvEST:Barley Assembly #35 Unigene = 14358 HarvEST Unigene 35 Probe Set = Contig1441_s_at; Contig1443_s_at Unigene 35 Rice Locus = LOC_Os06g41010 Description for best rice BLAST hit to Unigene 35 member = zinc finger A20 and AN1 domains-containing protein, putative, expressed; E value = 2E-77 Marker name in barley Pilot OPA2 = 2_1448 HarvEST Unigene 35 Probe Set = Contig1441_s_at, Contig1443_s_at Description for best rice BLAST hit to Unigene 35 member = protein zinc finger A20 and AN1 domains-containing protein, putative, expressed; E value = 2E-77 BLAST hit in the rice genome = zinc finger A20 and AN1 domains-containing protein, putative, expressed
Probe for Locus	HAR35_14358
Locus	POPA2_1448 POPA1_1027
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare