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GrainGenes Marker Report: POPA2_1454

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Locus	POPA2_1454
Type	SNP
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, SFNB QTL 2017 2H 158.87 Hordeum-OPA-2009-2H 158.87 Hordeum-OPA123-2008-2H 158.87
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, SFNB QTL 2017
Probe	HAR35_15988
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1454 Most representative HarvEST:Barley Assembly #32 Unigene = 9954 Most representative HarvEST:Barley Assembly #35 Unigene = 15988 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os04g59450 Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein kinase SAPK5, putative, expressed; E value = 3E-88 Marker name in barley Pilot OPA2 = 2_1454 Original SNP name = 9954-515 Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein kinase SAPK5, putative, expressed; E value = 3E-88 BLAST hit in the rice genome = serine/threonine-protein kinase SAPK5, putative, expressed
Probe for Locus	HAR35_15988
Locus	POPA2_1454
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare