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GrainGenes Marker Report: POPA2_1461

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Locus	POPA2_1461
Type	SNP
Synonym	Other name 12_21461 BOPA2_12_21461 Synonym 12_21461
Chromosome	2H
Map	Hordeum-OPAConsensus-2011-2H 40.03 Hordeum-OWB-OPA2008-2H 55.214
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14351 i_12_21461
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1461 Marker name in barley OPA1 = 12_21461 Original SNP name = ABC02112-1-9-351 Most representative HarvEST:Barley Assembly #32 Unigene = 1441 Most representative HarvEST:Barley Assembly #35 Unigene = 14351 HarvEST Unigene 35 Probe Set = Contig2112_at; rbah13p07_s_at Unigene 35 Rice Locus = LOC_Os07g48030 Description for best rice BLAST hit to Unigene 35 member = peroxidase 2 precursor, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = peroxidase 2 precursor, putative, expressed
Probe for Locus	HAR35_14351
Locus	POPA2_1461 POPA1_1056