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GrainGenes Marker Report: POPA2_1463

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Locus	POPA2_1463
Type	SNP
Synonym	Synonym 12_21463
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 60.77 Hordeum-OPA123-2008-1H 60.77 Hordeum-OPAConsensus-2011-1H 57.27 Hordeum-OWB-OPA2008-1H 67.569
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_836
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1463 Marker name in barley OPA1 = 12_21463 Original SNP name = ABC02590-1-1-198 Most representative HarvEST:Barley Assembly #32 Unigene = 1755 Most representative HarvEST:Barley Assembly #35 Unigene = 836 HarvEST Unigene 35 Probe Set = Contig2590_at Unigene 35 Rice Locus = LOC_Os05g31000 Description for best rice BLAST hit to Unigene 35 member = nascent polypeptide-associated complex alpha subunit-like protein, putative, expressed; E value = 4E-85 Marker name in barley Pilot OPA2 = 2_1463 Marker name in barley OPA2 = 12_21463 Original SNP name = U32_8495_216 Description for best rice BLAST hit to Unigene 35 member = protein nascent polypeptide-associated complex alpha subunit-like protein, putative, expressed; E value = 4E-85 BLAST hit in the rice genome = nascent polypeptide-associated complex alpha subunit-like protein, putative, expressed
Probe for Locus	HAR35_836
Locus	POPA2_1463
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare