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GrainGenes Marker Report: POPA2_1467

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Locus	POPA2_1467
Type	SNP
Synonym	Other name 11_21467 [ Show all 6 ]
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 119.67 Hordeum-OPA123-2008-6H 119.67 Hordeum-OPAConsensus-2011-6H 128.41 Hordeum-OWB-OPA2008-6H 149.926
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15570 i_11_21467
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1467 Marker name in barley OPA1 = 11_21467 Original SNP name = ABC03519-1-3-132 Most representative HarvEST:Barley Assembly #32 Unigene = 2411 Most representative HarvEST:Barley Assembly #35 Unigene = 15570 HarvEST Unigene 35 Probe Set = Contig3519_at; HT05E09u_s_at Unigene 35 Rice Locus = LOC_Os02g56850 Description for best rice BLAST hit to Unigene 35 member = glutathione reductase, cytosolic, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1467 HarvEST Unigene 35 Probe Set = Contig3519_at, HT05E09u_s_at Description for best rice BLAST hit to Unigene 35 member = protein glutathione reductase, cytosolic, putative, expressed; E value = 0 BLAST hit in the rice genome = glutathione reductase, cytosolic, putative, expressed
Probe for Locus	HAR35_15570
Locus	POPA2_1467 POPA1_0295
Synonym	Synonym BCD880 CDO836
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare