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GrainGenes Marker Report: POPA2_1473

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Locus	POPA2_1473
Type	SNP
Synonym	Other name 11_21473 BOPA1_11_21473 BOPA1_ABC04676-1-1-59 Synonym 11_21473
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 52.9 Hordeum-OPA-2009-6H 53.29 Hordeum-OPA123-2008-6H 53.29 Hordeum-OPAConsensus-2011-6H 57.18 Hordeum-OWB-OPA2008-6H 66.332
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1746 i_11_21473
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1473 Marker name in barley OPA1 = 11_21473 Original SNP name = ABC04676-1-1-59 Most representative HarvEST:Barley Assembly #32 Unigene = 3285 Most representative HarvEST:Barley Assembly #35 Unigene = 1746 HarvEST Unigene 35 Probe Set = Contig4676_at; HO11E24S_s_at Unigene 35 Rice Locus = LOC_Os02g08100 Description for best rice BLAST hit to Unigene 35 member = 4-coumarate--CoA ligase 1, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1473 HarvEST Unigene 35 Probe Set = Contig4676_at, HO11E24S_s_at Description for best rice BLAST hit to Unigene 35 member = protein 4-coumarate--CoA ligase 1, putative, expressed; E value = 0 BLAST hit in the rice genome = 4-coumarate--CoA ligase 1, putative, expressed
Probe for Locus	HAR35_1746
Locus	POPA2_1473
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare