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GrainGenes Marker Report: POPA2_1475

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Locus	POPA2_1475
Type	SNP
Synonym	Synonym 12_21475
Chromosome	3H
Chromosome Arm	3HS
Map	Hordeum-OPA-2009-3H 54.4 Hordeum-OPA123-2008-3H 54.4 Hordeum-OPAConsensus-2011-3H 67.86
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1587
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1475 Marker name in barley OPA1 = 12_21475 Original SNP name = ABC04904-1-2-311 Most representative HarvEST:Barley Assembly #32 Unigene = 3435 Most representative HarvEST:Barley Assembly #35 Unigene = 1587 HarvEST Unigene 35 Probe Set = Contig4904_at Unigene 35 Rice Locus = LOC_Os01g11810 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-102 Marker name in barley Pilot OPA2 = 2_1475 Marker name in barley OPA2 = 12_21475 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-102 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1587
Locus	POPA1_1102 POPA2_1475
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare