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GrainGenes Marker Report: POPA2_1484

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Locus	POPA2_1484
Type	SNP
Chromosome	2H
Chromosome Arm	2HL
Map	Barley-Core-2014_2H 142.03 Hordeum-OPA-2009-2H 127.64 Hordeum-OPA123-2008-2H 127.64 Hordeum-OPAConsensus-2011-2H 143.71
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_3036
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1484 Most representative HarvEST:Barley Assembly #32 Unigene = 5634 Most representative HarvEST:Barley Assembly #35 Unigene = 3036 HarvEST Unigene 35 Probe Set = Contig7433_at; Contig7433_s_at Unigene 35 Rice Locus = LOC_Os03g27280 Description for best rice BLAST hit to Unigene 35 member = serine/threonine-protein kinase SAPK1, putative, expressed; E value = 1E-180 Marker name in barley Pilot OPA2 = 2_1484 Original SNP name = ABC07433-1-1-354 HarvEST Unigene 35 Probe Set = Contig7433_at, Contig7433_s_at Description for best rice BLAST hit to Unigene 35 member = protein serine/threonine-protein kinase SAPK1, putative, expressed; E value = 1E-180 BLAST hit in the rice genome = serine/threonine-protein kinase SAPK1, putative, expressed
Probe for Locus	HAR35_3036
Locus	POPA2_1484
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare