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GrainGenes Marker Report: POPA2_1497

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Locus	POPA2_1497
Type	SNP
Synonym	Other name 12_21497 BOPA2_12_21497 Synonym 12_21497
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 76 Hordeum-OPA-2009-5H 94.43 Hordeum-OPA123-2008-5H 94.43 Hordeum-OPAConsensus-2011-5H 83.17
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_5189 i_12_21497
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1497 Marker name in barley OPA1 = 12_21497 Original SNP name = ABC11984-1-1-45 Most representative HarvEST:Barley Assembly #32 Unigene = 9665 Most representative HarvEST:Barley Assembly #35 Unigene = 5189 HarvEST Unigene 35 Probe Set = Contig11984_at Unigene 35 Rice Locus = LOC_Os09g30474 Description for best rice BLAST hit to Unigene 35 member = lipid binding protein, putative, expressed; E value = 1E-153 Marker name in barley Pilot OPA2 = 2_1497 Marker name in barley OPA2 = 12_21497 Description for best rice BLAST hit to Unigene 35 member = protein lipid binding protein, putative, expressed; E value = 1E-153 BLAST hit in the rice genome = lipid binding protein, putative, expressed
Probe for Locus	HAR35_5189
Locus	POPA1_1290 POPA2_1497
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare