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GrainGenes Marker Report: POPA2_1500

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Locus	POPA2_1500
Type	SNP
Synonym	Synonym 12_21500
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 171.64 Hordeum-OPA123-2008-3H 171.64 Hordeum-OPAConsensus-2011-3H 178.25 Hordeum-OWB-OPA2008-3H 204.731
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_19636
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1500 Marker name in barley OPA1 = 12_21500 Original SNP name = ABC13480-1-2-87 Most representative HarvEST:Barley Assembly #32 Unigene = 10515 Most representative HarvEST:Barley Assembly #35 Unigene = 19636 HarvEST Unigene 35 Probe Set = Contig13480_at Unigene 35 Rice Locus = LOC_Os01g74020 Description for best rice BLAST hit to Unigene 35 member = ARR1 protein-like, putative, expressed; E value = 3E-50 Marker name in barley Pilot OPA2 = 2_1500 Marker name in barley OPA2 = 12_21500 Description for best rice BLAST hit to Unigene 35 member = protein ARR1 protein-like, putative, expressed; E value = 3E-50 BLAST hit in the rice genome = ARR1 protein-like, putative, expressed
Probe for Locus	HAR35_19636
Locus	POPA1_1320 POPA2_1500
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare