GrainGenes Marker Report: POPA2_1503
Locus
POPA2_1503
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 172.25 Hordeum-OPA-2009-5H 183.6 Hordeum-OPA123-2008-5H 183.6 Hordeum-OPAConsensus-2011-5H 174.91
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_4109
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1503 Most representative HarvEST:Barley Assembly #32 Unigene = 11679 Most representative HarvEST:Barley Assembly #35 Unigene = 4109 HarvEST Unigene 35 Probe Set = Contig14544_at Unigene 35 Rice Locus = LOC_Os03g62790 Description for best rice BLAST hit to Unigene 35 member = pirin-like protein, putative, expressed; E value = 1E-159 Marker name in barley Pilot OPA2 = 2_1503 Original SNP name = ABC14544-1-1-31 Description for best rice BLAST hit to Unigene 35 member = protein pirin-like protein, putative, expressed; E value = 1E-159 BLAST hit in the rice genome = pirin-like protein, putative, expressed
Probe for Locus
HAR35_4109
Locus
POPA2_1503
Synonym
Synonym MWG2262
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1503
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