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GrainGenes Marker Report: POPA2_1511

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Locus	POPA2_1511
Type	SNP
Synonym	Other name 11_21511 BOPA1_11_21511 BOPA1_ABC18582-1-2-417 Synonym 11_21511
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 59.89 Hordeum-OPA123-2008-3H 59.89 Hordeum-OPAConsensus-2011-3H 71.26 Hordeum-OWB-OPA2008-3H 66.212
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_8070 i_11_21511
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1511 Marker name in barley OPA1 = 11_21511 Original SNP name = ABC18582-1-2-417 Most representative HarvEST:Barley Assembly #32 Unigene = 14122 Most representative HarvEST:Barley Assembly #35 Unigene = 8070 HarvEST Unigene 35 Probe Set = Contig18582_at; HU03I15u_s_at Unigene 35 Rice Locus = LOC_Os01g46760 Description for best rice BLAST hit to Unigene 35 member = protein phosphatase 2C ABI1, putative, expressed; E value = 1E-105 Marker name in barley Pilot OPA2 = 2_1511 HarvEST Unigene 35 Probe Set = Contig18582_at, HU03I15u_s_at Description for best rice BLAST hit to Unigene 35 member = protein protein phosphatase 2C ABI1, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = protein phosphatase 2C ABI1, putative, expressed
Probe for Locus	HAR35_8070
Locus	POPA2_1511 POPA1_1389
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare