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GrainGenes Marker Report: POPA2_1516

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Locus
POPA2_1516
Type
SNP
Synonym
Synonym11_21516
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H0
Hordeum-OPA123-2008-7H0
Hordeum-OPAConsensus-2011-7H0.21
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Probe
HAR35_15653
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1516
Marker name in barley OPA1 = 11_21516
Original SNP name = ConsensusGBS0018-3
Most representative HarvEST:Barley Assembly #32 Unigene = 3168
Most representative HarvEST:Barley Assembly #35 Unigene = 15653
HarvEST Unigene 35 Probe Set = Contig4521_s_at
Unigene 35 Rice Locus = LOC_Os02g01590
Description for best rice BLAST hit to Unigene 35 member = beta-fructofuranosidase 1 precursor, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1516
Original SNP name = AF509744_MX_948
Description for best rice BLAST hit to Unigene 35 member = protein beta-fructofuranosidase 1 precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = beta-fructofuranosidase 1 precursor, putative, expressed



Probe for Locus
HAR35_15653
Locus
POPA2_1516
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare