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GrainGenes Marker Report: POPA2_1517

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Locus	POPA2_1517
Type	SNP
Synonym	Synonym 11_21517
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 102.98 Hordeum-OPA123-2008-3H 102.98 Hordeum-OPAConsensus-2011-3H 113.05
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16921
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1517 Marker name in barley OPA1 = 11_21517 Original SNP name = ConsensusGBS0043-8 Most representative HarvEST:Barley Assembly #32 Unigene = 4527 Most representative HarvEST:Barley Assembly #35 Unigene = 16921 HarvEST Unigene 35 Probe Set = Contig6229_s_at; Contig6230_at Unigene 35 Rice Locus = LOC_Os01g63690 Description for best rice BLAST hit to Unigene 35 member = nematode-resistance protein, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1517 HarvEST Unigene 35 Probe Set = Contig6229_s_at, Contig6230_at Description for best rice BLAST hit to Unigene 35 member = protein nematode-resistance protein, putative, expressed; E value = 0 BLAST hit in the rice genome = nematode-resistance protein, putative, expressed
Probe for Locus	HAR35_16921
Locus	POPA2_1517
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare