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GrainGenes Marker Report: POPA2_1521

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Locus	POPA2_1521
Type	SNP
Synonym	Other name 11_21521 BOPA1_11_21521 BOPA1_ConsensusGBS0136-7 Synonym 11_21521
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 3.11 Hordeum-OPA123-2008-6H 3.11 Hordeum-OPAConsensus-2011-6H 2.24
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_12225 i_11_21521
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1521 Marker name in barley OPA1 = 11_21521 Original SNP name = ConsensusGBS0136-7 Most representative HarvEST:Barley Assembly #32 Unigene = 19865 Most representative HarvEST:Barley Assembly #35 Unigene = 12225 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os12g24020 Description for best rice BLAST hit to Unigene 35 member = senescence-associated protein DIN1, putative, expressed; E value = 1E-43 Marker name in barley Pilot OPA2 = 2_1521 Original SNP name = U35_18515_421 Description for best rice BLAST hit to Unigene 35 member = protein senescence-associated protein DIN1, putative, expressed; E value = 1E-43 BLAST hit in the rice genome = senescence-associated protein DIN1, putative, expressed
Probe for Locus	HAR35_12225
Locus	POPA2_1521 POPA1_1446
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare