Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1522

[Submit comment/correction]

Locus	POPA2_1522
Type	SNP
Synonym	Other name 12_21522 BOPA2_12_21522 Synonym 12_21522
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_15283 i_12_21522
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1522 Marker name in barley OPA1 = 12_21522 Original SNP name = ConsensusGBS0237-1 Most representative HarvEST:Barley Assembly #32 Unigene = 1976 Most representative HarvEST:Barley Assembly #35 Unigene = 15283 HarvEST Unigene 35 Probe Set = Contig2909_s_at Unigene 35 Rice Locus = LOC_Os05g48800 Description for best rice BLAST hit to Unigene 35 member = fiber protein Fb2, putative, expressed; E value = 5E-99 BLAST hit in the rice genome = fiber protein Fb2, putative, expressed
Probe for Locus	HAR35_15283
Locus	POPA1_1457 POPA2_1522
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare