Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1532

[Submit comment/correction]

Locus	POPA2_1532
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Barley-Core-2014_2H 14.48 Hordeum-OPA-2009-2H 9.28 Hordeum-OPA123-2008-2H 9.28 Hordeum-OPAConsensus-2011-2H 10.07
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_17116
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1532 Most representative HarvEST:Barley Assembly #32 Unigene = 4872 Most representative HarvEST:Barley Assembly #35 Unigene = 17116 HarvEST Unigene 35 Probe Set = Contig6757_at Unigene 35 Rice Locus = LOC_Os05g48510 Description for best rice BLAST hit to Unigene 35 member = phenylalanyl-tRNA synthetase beta chain, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1532 Original SNP name = ConsensusGBS0535-26 Description for best rice BLAST hit to Unigene 35 member = protein phenylalanyl-tRNA synthetase beta chain, putative, expressed; E value = 0 BLAST hit in the rice genome = phenylalanyl-tRNA synthetase beta chain, putative, expressed
Probe for Locus	HAR35_17116
Locus	POPA2_1532
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare