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GrainGenes Marker Report: POPA2_1534

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Locus	POPA2_1534
Type	SNP
Synonym	Other name 11_21534 BOPA1_11_21534 BOPA1_ConsensusGBS0644-2 Synonym 11_21534
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPAConsensus-2011-4H 138.7
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_1020 i_11_21534
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1534 Marker name in barley OPA1 = 11_21534 Original SNP name = ConsensusGBS0644-2 Most representative HarvEST:Barley Assembly #32 Unigene = 3410 Most representative HarvEST:Barley Assembly #35 Unigene = 1020 HarvEST Unigene 35 Probe Set = Contig4836_s_at; Contig4838_at Unigene 35 Rice Locus = LOC_Os05g24970 Description for best rice BLAST hit to Unigene 35 member = small nuclear ribonucleoprotein Sm D2, putative, expressed; E value = 6E-52 BLAST hit in the rice genome = small nuclear ribonucleoprotein Sm D2, putative, expressed
Probe for Locus	HAR35_1020
Locus	POPA2_1534 POPA1_1520