GrainGenes Marker Report: POPA2_1535
Locus
POPA2_1535
Type
SNP
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_6638
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 2_1535 Most representative HarvEST:Barley Assembly #32 Unigene = 10692 Most representative HarvEST:Barley Assembly #35 Unigene = 6638 HarvEST Unigene 35 Probe Set = Contig13813_at; EBed02_SQ002_H23_s_at Unigene 35 Rice Locus = LOC_Os01g52190 Description for best rice BLAST hit to Unigene 35 member = aspartic proteinase nepenthesin-1 precursor, putative; E value = 3E-39 BLAST hit in the rice genome = aspartic proteinase nepenthesin-1 precursor, putative
Probe for Locus
HAR35_6638
Locus
POPA1_1521 POPA2_1535
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1535
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