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GrainGenes Marker Report: POPA2_1536

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Locus	POPA2_1536
Type	SNP
Synonym	Other name 11_21536 BOPA1_11_21536 BOPA1_ConsensusGBS0654-4 Synonym 11_21536
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 46.2 Hordeum-OPA-2009-5H 56.77 Hordeum-OPA123-2008-5H 56.77 Hordeum-OPAConsensus-2011-5H 46.38 Hordeum-OWB-OPA2008-5H 64.921
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15437 i_11_21536
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1536 Marker name in barley OPA1 = 11_21536 Original SNP name = ConsensusGBS0654-4 Most representative HarvEST:Barley Assembly #32 Unigene = 1823 Most representative HarvEST:Barley Assembly #35 Unigene = 15437 HarvEST Unigene 35 Probe Set = Contig2714_at; Contig2716_s_at; Contig2717_at; HV12A05u_s_at Unigene 35 Rice Locus = LOC_Os12g01530 Description for best rice BLAST hit to Unigene 35 member = ferritin-1, chloroplast precursor, putative, expressed; E value = 1E-116 Marker name in barley Pilot OPA2 = 2_1536 HarvEST Unigene 35 Probe Set = Contig2714_at, Contig2716_s_at, Contig2717_at, HV12A05u_s_at Description for best rice BLAST hit to Unigene 35 member = protein ferritin-1, chloroplast precursor, putative, expressed; E value = 1E-116 BLAST hit in the rice genome = ferritin-1, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15437
Locus	POPA2_1536 POPA3_1117
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare