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GrainGenes Marker Report: POPA3_0002

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Locus	POPA3_0002
Type	SNP
Synonym	Other name 12_30002 BOPA2_12_30002 Synonym 12_30002
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_371 i_12_30002
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0002 Marker name in barley OPA1 = 12_30002 Original SNP name = ABC00495_1_569 Most representative HarvEST:Barley Assembly #32 Unigene = 560 Most representative HarvEST:Barley Assembly #35 Unigene = 371 HarvEST Unigene 35 Probe Set = Contig897_s_at Unigene 35 Rice Locus = LOC_Os01g45274 Description for best rice BLAST hit to Unigene 35 member = carbonic anhydrase, chloroplast precursor, putative, expressed; E value = 1E-119 BLAST hit in the rice genome = carbonic anhydrase, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_371
Locus	POPA3_0002
Synonym	Synonym psr117 PSR117
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare