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GrainGenes Marker Report: POPA3_0005

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Locus	POPA3_0005
Type	SNP
Synonym	Other name 12_30005 BOPA2_12_30005 Synonym 12_30005
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 65.52 Hordeum-OPA123-2008-3H 65.52 Hordeum-OPAConsensus-2011-3H 77.37
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_259 i_12_30005
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0005 Marker name in barley OPA1 = 12_30005 Original SNP name = ABC01483_1_288 Most representative HarvEST:Barley Assembly #32 Unigene = 1000 Most representative HarvEST:Barley Assembly #35 Unigene = 259 HarvEST Unigene 35 Probe Set = Contig1483_at; Contig491_s_at; rbaal1m15_s_at Unigene 35 Rice Locus = LOC_Os01g51410 Description for best rice BLAST hit to Unigene 35 member = glycine dehydrogenase, mitochondrial precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0005 Marker name in barley OPA2 = 12_30005 HarvEST Unigene 35 Probe Set = Contig1483_at, Contig491_s_at, rbaal1m15_s_at Description for best rice BLAST hit to Unigene 35 member = protein glycine dehydrogenase, mitochondrial precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = glycine dehydrogenase, mitochondrial precursor, putative, expressed
Probe for Locus	HAR35_259
Locus	POPA3_0005
Synonym	Synonym BCD263 PSR116 psr116 PSR171
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare