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GrainGenes Marker Report: POPA3_0006

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Locus	POPA3_0006
Type	SNP
Synonym	Other name 12_30006 BOPA2_12_30006 Synonym 12_30006
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 119.84 Hordeum-OPA123-2008-4H 119.84 Hordeum-OPAConsensus-2011-4H 130.81
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14468 i_12_30006
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0006 Marker name in barley OPA1 = 12_30006 Original SNP name = ABC01616_1_514 Most representative HarvEST:Barley Assembly #32 Unigene = 1071 Most representative HarvEST:Barley Assembly #35 Unigene = 14468 HarvEST Unigene 35 Probe Set = Contig1616_at Unigene 35 Rice Locus = LOC_Os10g39840 Description for best rice BLAST hit to Unigene 35 member = xyloglucan endotransglucosylase/hydrolase protein 32 precursor, putative, expressed; E value = 1E-134 Marker name in barley Pilot OPA3 = 3_0006 Marker name in barley OPA2 = 12_30006 Description for best rice BLAST hit to Unigene 35 member = protein xyloglucan endotransglucosylase/hydrolase protein 32 precursor, putative, expressed; E value = 1E-134 BLAST hit in the rice genome = xyloglucan endotransglucosylase/hydrolase protein 32 precursor, putative, expressed
Probe for Locus	HAR35_14468
Locus	POPA3_0006
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare