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GrainGenes Marker Report: POPA3_0014

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Locus
POPA3_0014
Type
SNP
Synonym
Other name12_30014
BOPA2_12_30014
Synonym12_30014
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H113.3
Hordeum-OPA123-2008-1H113.3
Hordeum-OPAConsensus-2011-1H114.72
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15343
i_12_30014
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0014
Marker name in barley OPA1 = 12_30014
Original SNP name = ABC02471_2_350
Most representative HarvEST:Barley Assembly #32 Unigene = 2203
Most representative HarvEST:Barley Assembly #35 Unigene = 15343
HarvEST Unigene 35 Probe Set = Contig2471_at
Unigene 35 Rice Locus = LOC_Os08g36920
Description for best rice BLAST hit to Unigene 35 member = AP2 domain containing protein, expressed; E value = 2E-75
Marker name in barley Pilot OPA3 = 3_0014
Marker name in barley OPA2 = 12_30014
Description for best rice BLAST hit to Unigene 35 member = protein AP2 domain containing protein, expressed; E value = 2E-75
BLAST hit in the rice genome = AP2 domain containing protein, expressed


Probe for Locus
HAR35_15343
Locus
POPA3_0014
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare