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GrainGenes Marker Report: POPA3_0031

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Locus	POPA3_0031
Type	SNP
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 68.46 Hordeum-OPA123-2008-7H 68.46 Hordeum-OWB-OPA2008-7H 64.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_13893
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_0031 Most representative HarvEST:Barley Assembly #32 Unigene = 3158 Most representative HarvEST:Barley Assembly #35 Unigene = 13893 HarvEST Unigene 35 Probe Set = Contig1021_at; Contig4517_at Unigene 35 Rice Locus = LOC_Os06g11330 Description for best rice BLAST hit to Unigene 35 member = MADS-box transcription factor 22, putative, expressed; E value = 4E-95 Marker name in barley Pilot OPA3 = 3_0031 HarvEST Unigene 35 Probe Set = Contig1021_at, Contig4517_at Description for best rice BLAST hit to Unigene 35 member = protein MADS-box transcription factor 22, putative, expressed; E value = 4E-95 BLAST hit in the rice genome = MADS-box transcription factor 22, putative, expressed
Probe for Locus	HAR35_13893
Locus	POPA3_0031 POPA3_0875
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare