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GrainGenes Marker Report: POPA3_0032

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Locus	POPA3_0032
Type	SNP
Synonym	Other name 12_30032 BOPA2_12_30032 Synonym 12_30032
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 52.75 Hordeum-OPA123-2008-6H 52.75 Hordeum-OPAConsensus-2011-6H 56.06 Hordeum-OWB-OPA2008-6H 66.332
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16167 i_12_30032
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0032 Marker name in barley OPA1 = 12_30032 Original SNP name = ABC04590_1_270 Most representative HarvEST:Barley Assembly #32 Unigene = 3255 Most representative HarvEST:Barley Assembly #35 Unigene = 16167 HarvEST Unigene 35 Probe Set = Contig4590_at Unigene 35 Rice Locus = LOC_Os02g09590 Description for best rice BLAST hit to Unigene 35 member = ribosome-like protein, putative, expressed; E value = 9E-53 Marker name in barley Pilot OPA3 = 3_0032 Marker name in barley OPA2 = 12_30032 Description for best rice BLAST hit to Unigene 35 member = protein ribosome-like protein, putative, expressed; E value = 9E-53 BLAST hit in the rice genome = ribosome-like protein, putative, expressed
Probe for Locus	HAR35_16167
Locus	POPA3_0032
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare