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GrainGenes Marker Report: POPA3_0040

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Locus	POPA3_0040
Type	SNP
Synonym	Other name 12_30040 BOPA2_12_30040 Synonym 12_30040
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 31.75 Hordeum-OPA123-2008-7H 31.75 Hordeum-OPAConsensus-2011-7H 26.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1495 i_12_30040
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0040 Marker name in barley OPA1 = 12_30040 Original SNP name = ABC05587_2_9_130 Most representative HarvEST:Barley Assembly #32 Unigene = 4017 Most representative HarvEST:Barley Assembly #35 Unigene = 1495 HarvEST Unigene 35 Probe Set = Contig5587_at; HVSMEf0016E23r2_s_at Unigene 35 Rice Locus = LOC_Os01g15709 Marker name in barley Pilot OPA3 = 3_0040 Marker name in barley OPA2 = 12_30040 HarvEST Unigene 35 Probe Set = Contig5587_at, HVSMEf0016E23r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein transferase, putative; E value = 1E-135 BLAST hit in the rice genome = transferase, putative
Probe for Locus	HAR35_1495
Locus	POPA3_0040
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare