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GrainGenes Marker Report: POPA3_0046

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Locus	POPA3_0046
Type	SNP
Synonym	Synonym 12_30046
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 96.59 Hordeum-OPA123-2008-4H 96.59 Hordeum-OPAConsensus-2011-4H 105.83 Hordeum-OWB-OPA2008-4H 96.363
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_2255
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0046 Marker name in barley OPA1 = 12_30046 Original SNP name = ABC06018_60 Most representative HarvEST:Barley Assembly #32 Unigene = 4452 Most representative HarvEST:Barley Assembly #35 Unigene = 2255 HarvEST Unigene 35 Probe Set = Contig6018_at; rbaal20n01_s_at Unigene 35 Rice Locus = LOC_Os01g32660 Description for best rice BLAST hit to Unigene 35 member = OsMKK6 - putative MAPKK based on amino acid sequence homology, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0046 Marker name in barley OPA2 = 12_30046 Original SNP name = U32_5144_1710 HarvEST Unigene 35 Probe Set = Contig6018_at, rbaal20n01_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsMKK6 - putative MAPKK based on amino acid sequence homology, expressed; E value = 0 BLAST hit in the rice genome = OsMKK6 - putative MAPKK based on amino acid sequence homology, expressed
Probe for Locus	HAR35_2255
Locus	POPA3_0046
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare