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GrainGenes Marker Report: POPA3_0059

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Locus	POPA3_0059
Type	SNP
Synonym	Other name 12_30059 BOPA2_12_30059 Synonym 12_30059
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 52.46 Hordeum-OPA123-2008-1H 52.46 Hordeum-OPAConsensus-2011-1H 45.2
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15752 i_12_30059
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0059 Marker name in barley OPA1 = 12_30059 Original SNP name = ABC06622_1_419 Most representative HarvEST:Barley Assembly #32 Unigene = 4815 Most representative HarvEST:Barley Assembly #35 Unigene = 15752 HarvEST Unigene 35 Probe Set = Contig6622_at; HVSMEb0014F22f_s_at Unigene 35 Rice Locus = LOC_Os10g37340 Description for best rice BLAST hit to Unigene 35 member = O-succinylhomoserine sulfhydrylase, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0059 Marker name in barley OPA2 = 12_30059 HarvEST Unigene 35 Probe Set = Contig6622_at, HVSMEb0014F22f_s_at Description for best rice BLAST hit to Unigene 35 member = protein O-succinylhomoserine sulfhydrylase, putative, expressed; E value = 0 BLAST hit in the rice genome = O-succinylhomoserine sulfhydrylase, putative, expressed
Probe for Locus	HAR35_15752
Locus	POPA3_0059
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare