Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0063

[Submit comment/correction]

Locus	POPA3_0063
Type	SNP
Synonym	Synonym 12_30063
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 31.75 Hordeum-OPA123-2008-7H 31.75 Hordeum-OPAConsensus-2011-7H 26.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16816
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0063 Marker name in barley OPA1 = 12_30063 Original SNP name = ABC06931_1_38 Most representative HarvEST:Barley Assembly #32 Unigene = 4982 Most representative HarvEST:Barley Assembly #35 Unigene = 16816 HarvEST Unigene 35 Probe Set = Contig6931_at Unigene 35 Rice Locus = LOC_Os06g05550 Description for best rice BLAST hit to Unigene 35 member = anther-specific proline-rich protein APG precursor, putative, expressed; E value = 1E-167 Marker name in barley Pilot OPA3 = 3_0063 Marker name in barley OPA2 = 12_30063 Description for best rice BLAST hit to Unigene 35 member = protein anther-specific proline-rich protein APG precursor, putative, expressed; E value = 1E-167 BLAST hit in the rice genome = anther-specific proline-rich protein APG precursor, putative, expressed
Probe for Locus	HAR35_16816
Locus	POPA3_0063
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare